At 4NEC2 plots of STL VSWR and 4NEC2 plots of STL VSWR II I explained a method of working around a limitation of 4NEC2 values for Zo that can be applied using the Settings menu.
I can advise that exactly the same change works in 4NEC2 v5.9.3
It appears that 4NEC2 enforces a requirement that Zo>=0.1, so having discovered that by trial and error, one wondered if it was possible to change that threshold by hacking the exe file.
The IEEE754 Double representation of 0.1 is 0x3FB999999999999A, and of course it would be stored backwords in the exe file. Searching for 0x9A9999999999B93F found only one occurrence, offset 0x1490. That was changed to 0xfca0f1d24d62503f (the backwords representation of 0.001) and the exe tested. (It might be tempting to set it so zero, but that would permit entering zero which may cause run time errors).
To my delight, it now permits directly changing Zo down to 0.001Ω.
There is a side effect of this change, it appears that the literal constant is used by (at least) one other function, and current graphs on the geometry window need to be scaled up with the page up key to be useful.
You do not need to use xdelta3, but if you do, download 4NEC2-5.9.3-ZoPatch.zip .